The join date is wrong
APIT is annual, collected monthly. If the join date is wrong the system spreads tax across the wrong number of months — every monthly deduction is then too high or too low.
APIT uses the join date to know how many months of the year of assessment the salary covers. Put April when they really joined October (or the reverse) and every monthly deduction is calculated against the wrong span — building toward a year-end surprise.
Joined Apr, system thinks Oct
6 months deducted
Rs. 48,000
Correct: full year from April
12 months
Rs. 96,000
Confirm each employee's actual first pay-period date in the year of assessment.
Table 01 · steady Rs.250k/mo